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SPATA31C1 SPATA31 subfamily C member 1 [ Homo sapiens (human) ]

Gene ID: 441452, updated on 23-Nov-2021

Summary

Official Symbol
SPATA31C1provided by HGNC
Official Full Name
SPATA31 subfamily C member 1provided by HGNC
Primary source
HGNC:HGNC:27846
See related
Ensembl:ENSG00000230246
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM75C1; SPATA31C2
Expression
Restricted expression toward testis (RPKM 6.6) See more
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Genomic context

See SPATA31C1 in Genome Data Viewer
Location:
9q22.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (87913936..87923657)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (90532877..90538572)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987091 Neighboring gene uncharacterized LOC497256 Neighboring gene SPATA31 subfamily E member 1 Neighboring gene zinc finger protein 598, E3 ubiquitin ligase pseudogene Neighboring gene uncharacterized LOC122394732

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Clone Names

  • FLJ36055

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
putative spermatogenesis-associated protein 31C1
Names
family with sequence similarity 75, member C1
spermatogenesis-associated protein 31C1
spermatogenesis-associated protein 31C2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145124.1NP_001138596.1  putative spermatogenesis-associated protein 31C1

    See identical proteins and their annotated locations for NP_001138596.1

    Status: VALIDATED

    Source sequence(s)
    AK310310, AL353572, DB065037
    UniProtKB/Swiss-Prot
    P0DKV0
    Conserved Domains (2) summary
    pfam14650
    Location:317606
    FAM75; FAM75 family
    pfam15371
    Location:88167
    DUF4599; Domain of unknown function (DUF4599)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    87913936..87923657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011518702.1XP_011517004.1  putative spermatogenesis-associated protein 31C1 isoform X2

    See identical proteins and their annotated locations for XP_011517004.1

    Conserved Domains (3) summary
    PHA03247
    Location:142385
    PHA03247; large tegument protein UL36; Provisional
    pfam14650
    Location:331620
    FAM75; FAM75 family
    pfam15371
    Location:103183
    DUF4599; Domain of unknown function (DUF4599)
  2. XM_011518701.2XP_011517003.1  putative spermatogenesis-associated protein 31C1 isoform X1

    See identical proteins and their annotated locations for XP_011517003.1

    Related
    ENST00000420021.2
    Conserved Domains (3) summary
    PHA03247
    Location:142385
    PHA03247; large tegument protein UL36; Provisional
    pfam14650
    Location:331620
    FAM75; FAM75 family
    pfam15371
    Location:103183
    DUF4599; Domain of unknown function (DUF4599)
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