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ANKRD20A3P ankyrin repeat domain 20 family member A3, pseudogene [ Homo sapiens (human) ]

Gene ID: 441425, updated on 29-Nov-2019

Summary

Official Symbol
ANKRD20A3Pprovided by HGNC
Official Full Name
ankyrin repeat domain 20 family member A3, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:31981
See related
Ensembl:ENSG00000276203
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ANKRD20A3
Expression
Biased expression in testis (RPKM 4.5), lung (RPKM 0.8) and 11 other tissues See more

Genomic context

See ANKRD20A3P in Genome Data Viewer
Location:
9q21.11
Exon count:
19
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (66093946..66154762, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (43089972..43133732, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 95 member B1-like Neighboring gene cytochrome P450 family 4 subfamily F member 59, pseudogene Neighboring gene sorting nexin 18 pseudogene 4 Neighboring gene RNA, U6 small nuclear 538, pseudogene Neighboring gene general transcription factor II, i pseudogene Neighboring gene meprin A subunit alpha pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • ankyrin repeat domain 20 family member A3
  • ankyrin repeat domain 20A-related
  • ankyrin repeat domain-containing protein 20A3

Clone Names

  • MGC176486, MGC198508

General protein information

Preferred Names
ankyrin repeat domain-containing protein 20A3

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    66093946..66154762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011543860.3XP_011542162.1  ankyrin repeat domain-containing protein 20A3 isoform X1

    Conserved Domains (5) summary
    cd00204
    Location:61186
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:71163
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:3787
    Ank_4; Ankyrin repeats (many copies)
    pfam14915
    Location:514805
    CCDC144C; CCDC144C protein coiled-coil region
    sd00045
    Location:99130
    ANK; ANK repeat [structural motif]
  2. NM_001012419.2NP_001012419.1  

    UniProtKB/Swiss-Prot
    Q5VUR7
    UniProtKB/TrEMBL
    B2RTT7
    Conserved Domains (5) summary
    cd00204
    Location:61186
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:71163
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:3787
    Ank_4; Ankyrin repeats (many copies)
    pfam14915
    Location:514805
    CCDC144C; CCDC144C protein coiled-coil region
    sd00045
    Location:99130
    ANK; ANK repeat [structural motif]
  3. XM_005272525.4XP_005272582.1  ankyrin repeat domain-containing protein 20A3 isoform X2

    Conserved Domains (5) summary
    cd00204
    Location:61186
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:71163
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:3787
    Ank_4; Ankyrin repeats (many copies)
    pfam14915
    Location:513804
    CCDC144C; CCDC144C protein coiled-coil region
    sd00045
    Location:99130
    ANK; ANK repeat [structural motif]
  4. XM_011543861.3XP_011542163.1  ankyrin repeat domain-containing protein 20A3 isoform X3

    See identical proteins and their annotated locations for XP_011542163.1

    Conserved Domains (4) summary
    cd00204
    Location:61186
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:71163
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:3787
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:99130
    ANK; ANK repeat [structural motif]

RNA

  1. XR_001746296.2 RNA Sequence

  2. XR_001746295.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001012419.2: Suppressed sequence

    Description
    NM_001012419.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
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