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PDGFA-DT PDGFA divergent transcript [ Homo sapiens (human) ]

Gene ID: 441307, updated on 13-May-2022

Summary

Official Symbol
PDGFA-DTprovided by HGNC
Official Full Name
PDGFA divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55865
See related
Ensembl:ENSG00000223855 AllianceGenome:HGNC:55865
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HRAT92
Expression
Broad expression in heart (RPKM 1.6), spleen (RPKM 0.4) and 14 other tissues See more
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Genomic context

See PDGFA-DT in Genome Data Viewer
Location:
7p22.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (520391..525232)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (621368..626210)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (560028..564869)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 3057 Neighboring gene Sharpr-MPRA regulatory region 8552 Neighboring gene platelet derived growth factor subunit A Neighboring gene PRKAR1B antisense RNA 2 Neighboring gene protein kinase cAMP-dependent type I regulatory subunit beta Neighboring gene PRKAR1B antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • heart tissue-associated transcript 92

Clone Names

  • FLJ44511, AC147651.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033963.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC147651, AK126475
    Related
    ENST00000452622.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    520391..525232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    621368..626210
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)