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SPDYE3 speedy/RINGO cell cycle regulator family member E3 [ Homo sapiens (human) ]

Gene ID: 441272, updated on 5-Aug-2022

Summary

Official Symbol
SPDYE3provided by HGNC
Official Full Name
speedy/RINGO cell cycle regulator family member E3provided by HGNC
Primary source
HGNC:HGNC:35462
See related
Ensembl:ENSG00000214300 MIM:617625; AllianceGenome:HGNC:35462
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPDYB2
Summary
Predicted to enable protein kinase binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis (RPKM 3.8), lymph node (RPKM 1.4) and 23 other tissues See more
Orthologs
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Genomic context

See SPDYE3 in Genome Data Viewer
Location:
7q22.1
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (100307702..100322196)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (101547789..101562282)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (99905325..99919819)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene stromal antigen 3 Neighboring gene CASTOR family member 3, pseudogene Neighboring gene PVR related immunoglobulin domain containing Neighboring gene uncharacterized LOC105375426 Neighboring gene STAG3L5P-PVRIG2P-PILRB readthrough Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 1 Neighboring gene stromal antigen 3-like 5 pseudogene Neighboring gene PVR related immunoglobulin domain containing 2, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC57359, MGC119294

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
speedy protein E3
Names
Putative WBSCR19-like protein 7
putative Speedy protein E3
speedy homolog E3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004351.5NP_001004351.3  speedy protein E3

    See identical proteins and their annotated locations for NP_001004351.3

    Status: VALIDATED

    Source sequence(s)
    BC056606, BC100972
    Consensus CDS
    CCDS47658.2
    UniProtKB/Swiss-Prot
    A6NKU9, Q6PHC4
    Related
    ENSP00000329565.6, ENST00000332397.6
    Conserved Domains (1) summary
    pfam11357
    Location:391545
    Spy1; Cell cycle regulatory protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    100307702..100322196
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047420404.1XP_047276360.1  speedy protein E3 isoform X1

    UniProtKB/Swiss-Prot
    Q6PHC4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    101547789..101562282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)