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NR2F1-AS1 NR2F1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 441094, updated on 30-Nov-2019

Summary

Official Symbol
NR2F1-AS1provided by HGNC
Official Full Name
NR2F1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:48622
See related
Ensembl:ENSG00000237187
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 3.7), gall bladder (RPKM 2.2) and 20 other tissues See more

Genomic context

See NR2F1-AS1 in Genome Data Viewer
Location:
5q15
Exon count:
12
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (93409356..93581320, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (92745065..92917003, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1060 Neighboring gene VISTA enhancer hs1172 Neighboring gene VISTA enhancer hs546 Neighboring gene nuclear receptor subfamily 2 group F member 1 Neighboring gene family with sequence similarity 172 member A Neighboring gene microRNA 2277

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ42709, DKFZp686H18199

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_021490.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks six exons and includes three alternate exons, compared to variant 1.
    Source sequence(s)
    BC010610, DA107272
    Related
    ENST00000661182.1
  2. NR_021491.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks four exons and includes one alternate exon, compared to variant 1.
    Source sequence(s)
    AK124699, AW194934, BC010610, BC042879, DA107272
    Related
    ENST00000665798.1
  3. NR_109818.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks five exons and includes three alternate exons, compared to variant 1.
    Source sequence(s)
    AK095719, DC298450
    Related
    ENST00000504474.5
  4. NR_109819.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks six exons and includes three alternate exons, compared to variant 1.
    Source sequence(s)
    AK296281, AK311323, BC010610, DC298450
  5. NR_109820.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) lacks five exons and includes one alternate exon, compared to variant 1.
    Source sequence(s)
    AK124699, AW194934, BC018089, DC298450
    Related
    ENST00000671514.1
  6. NR_109821.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) lacks four exons and includes two alternate exons, compared to variant 1.
    Source sequence(s)
    AK124699, AW194934, BC042879, BC144331, DC298450
    Related
    ENST00000656079.1
  7. NR_109822.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) lacks seven exons and includes one alternate exon, compared to variant 1.
    Source sequence(s)
    AK124699, AK296281, AW194934, DC298450
    Related
    ENST00000510254.6
  8. NR_109823.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) lacks five exons and includes one alternate exon, compared to variant 1.
    Source sequence(s)
    AK124699, AW194934, DC298450, HY108556
    Related
    ENST00000671432.1
  9. NR_109824.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10) lacks four exons and includes one alternate exon, compared to variant 1.
    Source sequence(s)
    AK124699, AW194934, DB257894, DC298450
    Related
    ENST00000653133.1
  10. NR_109825.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AK124699, AW194934, BC044619, BC144330

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    93409356..93581320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_015369.1: Suppressed sequence

    Description
    NR_015369.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
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