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NR2F1-AS1 NR2F1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 441094, updated on 15-Jan-2024

Summary

Official Symbol
NR2F1-AS1provided by HGNC
Official Full Name
NR2F1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:48622
See related
Ensembl:ENSG00000237187 AllianceGenome:HGNC:48622
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 3.7), gall bladder (RPKM 2.2) and 20 other tissues See more
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Genomic context

See NR2F1-AS1 in Genome Data Viewer
Location:
5q15
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (93409356..93585589, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (93893440..94069652, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (92745062..92917026, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379083 Neighboring gene VISTA enhancer hs1170 Neighboring gene NANOG hESC enhancer GRCh37_chr5:92582002-92582507 Neighboring gene VISTA enhancer hs1060 Neighboring gene VISTA enhancer hs1172 Neighboring gene DNA polymerase delta 2, accessory subunit pseudogene 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:92694967-92696166 Neighboring gene Sharpr-MPRA regulatory region 8230 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:92792425-92792926 Neighboring gene VISTA enhancer hs546 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:92840906-92841406 Neighboring gene uncharacterized LOC124901026 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16175 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22788 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16176 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16177 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:92931735-92932535 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:92932536-92933335 Neighboring gene uncharacterized LOC124901027 Neighboring gene NANOG hESC enhancer GRCh37_chr5:92935096-92935597 Neighboring gene Sharpr-MPRA regulatory region 13970 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:92953840-92954648 Neighboring gene nuclear receptor subfamily 2 group F member 1 Neighboring gene microRNA 2277 Neighboring gene ARB2 cotranscriptional regulator A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ42709, DKFZp686H18199

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_021490.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106818, AC114961
    Related
    ENST00000661182.1
  2. NR_021491.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000665798.1
  3. NR_109818.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106818, AC114961
    Related
    ENST00000504474.5
  4. NR_109819.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106818, AC114961
  5. NR_109820.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000671514.1
  6. NR_109821.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
  7. NR_109822.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000510254.7
  8. NR_109823.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000671432.1
  9. NR_109824.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000653133.1
  10. NR_109825.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC012619, AC106818
  11. NR_186182.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012619, AC106818
    Related
    ENST00000663096.1
  12. NR_186183.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106818, AC114961
  13. NR_186184.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000660787.1
  14. NR_186185.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000661345.1
  15. NR_186186.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
    Related
    ENST00000656079.1
  16. NR_186187.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC012619, AC106818
  17. NR_186188.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000671683.1
  18. NR_186189.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000659983.1
  19. NR_186190.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
    Related
    ENST00000664017.1
  20. NR_186191.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
  21. NR_186192.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000654431.1
  22. NR_186193.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
  23. NR_186194.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
  24. NR_186195.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
  25. NR_186196.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
  26. NR_186197.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000655613.1
  27. NR_186198.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
  28. NR_186199.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000658662.1
  29. NR_186200.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC012619, AC106818
  30. NR_186201.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC012619, AC106818
  31. NR_186202.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106818, AC114961
  32. NR_186203.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012619, AC106818
  33. NR_186204.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000656921.1
  34. NR_186205.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
  35. NR_186206.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000607797.5
  36. NR_186207.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000666791.1
  37. NR_186209.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
  38. NR_186210.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106818, AC114961
  39. NR_186211.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
  40. NR_186212.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106818, AC114961
  41. NR_186213.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
  42. NR_186214.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
  43. NR_186215.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
  44. NR_186216.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
    Related
    ENST00000657648.1
  45. NR_186217.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000661870.1
  46. NR_186218.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000659381.1
  47. NR_186219.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818, AC114961
  48. NR_186220.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
  49. NR_186221.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC106818
    Related
    ENST00000656155.1
  50. NR_186222.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008500, AC012619, AC106818

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    93409356..93585589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    93893440..94069652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_015369.1: Suppressed sequence

    Description
    NR_015369.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.