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H2BC18 H2B clustered histone 18 [ Homo sapiens (human) ]

Gene ID: 440689, updated on 13-Mar-2020

Summary

Official Symbol
H2BC18provided by HGNC
Official Full Name
H2B clustered histone 18provided by HGNC
Primary source
HGNC:HGNC:24700
See related
Ensembl:ENSG00000203814
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HIST2H2BF
Summary
Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. This structure consists of approximately 146 bp of DNA wrapped around a nucleosome, an octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene encodes a replication-dependent histone that is a member of the histone H2B family and is found in a histone cluster on chromosome 1. [provided by RefSeq, Aug 2015]
Expression
Broad expression in prostate (RPKM 4.3), appendix (RPKM 1.9) and 23 other tissues See more
Orthologs

Genomic context

See H2BC18 in Genome Data Viewer
Location:
1q21.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (149782689..149812373, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (149754245..149783965, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 D4 (putative) pseudogene Neighboring gene tRNA-Arg (anticodon CCT) 8-1 Neighboring gene Fc fragment of IgG receptor Ia Neighboring gene H3 clustered histone 13 Neighboring gene H4 clustered histone 14

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Rev rev HIV-1 Rev interacting protein, histone cluster 2, H2bf (HIST2H2BF), is identified by the in-vitro binding experiments involving cytosolic or nuclear extracts from HeLa cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ35099, FLJ56780, FLJ56787, MGC131639

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
molecular_function ND
No biological Data available
more info
 
protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
nucleosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
extracellular exosome HDA PubMed 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleoplasm TAS
Traceable Author Statement
more info
 
nucleosome IEA
Inferred from Electronic Annotation
more info
 
nucleus HDA PubMed 

General protein information

Preferred Names
histone H2B type 2-F
Names
histone cluster 2 H2B family member f
histone cluster 2, H2bf

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033089.1 RefSeqGene

    Range
    5001..34684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001024599.5NP_001019770.1  histone H2B type 2-F isoform a

    See identical proteins and their annotated locations for NP_001019770.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) differs in the 3' coding region and 3' UTR, compared to variant 2. The encoded isoform (a) has a shorter C-terminus compared to isoform b.
    Source sequence(s)
    AC239868
    Consensus CDS
    CCDS30846.1
    UniProtKB/Swiss-Prot
    Q5QNW6
    Related
    ENSP00000358164.1, ENST00000369167.2
    Conserved Domains (1) summary
    smart00427
    Location:28124
    H2B; Histone H2B
  2. NM_001161334.1NP_001154806.1  histone H2B type 2-F isoform b

    See identical proteins and their annotated locations for NP_001154806.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) encodes the longer isoform (b)
    Source sequence(s)
    AK296916, DA042901
    Consensus CDS
    CCDS53359.1
    UniProtKB/Swiss-Prot
    Q5QNW6
    Related
    ENSP00000445831.1, ENST00000545683.1
    Conserved Domains (1) summary
    smart00427
    Location:28124
    H2B; Histone H2B

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    149782689..149812373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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