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SLC2A1-DT SLC2A1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 440584, updated on 19-Jul-2022

Summary

Official Symbol
SLC2A1-DTprovided by HGNC
Official Full Name
SLC2A1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:44187
See related
Ensembl:ENSG00000227533 AllianceGenome:HGNC:44187
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SLC2A1-AS1
Expression
Biased expression in placenta (RPKM 6.0), brain (RPKM 2.7) and 9 other tissues See more
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Genomic context

See SLC2A1-DT in Genome Data Viewer
Location:
1p34.2
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (42959049..42983358)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (42829519..42853826)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (43424720..43449029)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V1 subunit E1 pseudogene 1 Neighboring gene solute carrier family 2 member 1 Neighboring gene Sharpr-MPRA regulatory region 3978 Neighboring gene ATPase H+ transporting V0 subunit c pseudogene 4 Neighboring gene Sharpr-MPRA regulatory region 619 Neighboring gene RNA, U6 small nuclear 880, pseudogene Neighboring gene Sharpr-MPRA regulatory region 10275

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • SLC2A1 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ32224

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033967.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099795, AI025943, BU657382
    Related
    ENST00000431759.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    42959049..42983358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    42829519..42853826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)