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CCDC144NL-AS1 CCDC144NL antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 440416, updated on 10-Oct-2023

Summary

Official Symbol
CCDC144NL-AS1provided by HGNC
Official Full Name
CCDC144NL antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51340
See related
Ensembl:ENSG00000233098 AllianceGenome:HGNC:51340
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.7), placenta (RPKM 0.3) and 1 other tissue See more
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Genomic context

Location:
17p11.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20868527..20930041)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20817343..20878856)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (20771840..20833354)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene stearoyl-CoA desaturase pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8309 Neighboring gene ABHD17A pseudogene 6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20771529-20772419 Neighboring gene CCDC144A N-terminal like (pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20795800-20796300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20796301-20796801 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20799361-20799876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:20802310-20803177 Neighboring gene RNA, U6 small nuclear 1178, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20811295-20811890 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8310 Neighboring gene ribonuclease H1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20841589-20842090 Neighboring gene uncharacterized LOC124900389 Neighboring gene Sharpr-MPRA regulatory region 15661 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:20845395-20845894 Neighboring gene uncharacterized LOC339260 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11874 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11875 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11876 Neighboring gene SPECC1 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20901079-20901896 Neighboring gene ubiquitin specific peptidase 22 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:20937215-20937716 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8311 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20946145-20947094

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104185.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK057473, BC041488
    Related
    ENST00000583962.2
  2. NR_160710.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI143571, AL711205, BX112256, CN415461
    Related
    ENST00000692309.1
  3. NR_160711.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090774

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    20868527..20930041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    20817343..20878856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)