Format

Send to:

Choose Destination

CDIPTOSP CDIP transferase opposite strand, pseudogene [ Homo sapiens (human) ]

Gene ID: 440356, updated on 24-Nov-2020

Summary

Official Symbol
CDIPTOSPprovided by HGNC
Official Full Name
CDIP transferase opposite strand, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48609
See related
Ensembl:ENSG00000214725
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CDIPT-AS1
Expression
Restricted expression toward testis (RPKM 33.0) See more

Genomic context

See CDIPTOSP in Genome Data Viewer
Location:
16p11.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (29863683..29868053)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (29875004..29879374)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene PAXIP1 associated glutamate rich protein 1 Neighboring gene major vault protein Neighboring gene CDP-diacylglycerol--inositol 3-phosphatidyltransferase Neighboring gene seizure related 6 homolog like 2 Neighboring gene Sharpr-MPRA regulatory region 6067 Neighboring gene aspartate beta-hydroxylase domain containing 1 Neighboring gene potassium channel tetramerization domain containing 13

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • CDIPT antisense RNA 1 (head to head)
  • CTD-2574D22.5

Clone Names

  • FLJ27521

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015396.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AI269516, AK131031
    Related
    ENST00000398859.4
  2. NR_024370.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1.
    Source sequence(s)
    AI269516, BM006535
    Related
    ENST00000565014.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    29863683..29868053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center