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NPIPB12 nuclear pore complex interacting protein family member B12 [ Homo sapiens (human) ]

Gene ID: 440353, updated on 5-Jan-2022

Summary

Official Symbol
NPIPB12provided by HGNC
Official Full Name
nuclear pore complex interacting protein family member B12provided by HGNC
Primary source
HGNC:HGNC:37491
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Located in nucleoplasm. [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
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Genomic context

See NPIPB12 in Genome Data Viewer
Location:
16p11.2
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (29483534..29506408, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (29494855..29517195, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene SLX1B-SULT1A4 readthrough (NMD candidate) Neighboring gene uncharacterized LOC101928556 Neighboring gene sulfotransferase family 1A member 4 Neighboring gene SAGA complex associated factor 29 pseudogene Neighboring gene SMG1 pseudogene 2 Neighboring gene uncharacterized LOC105371168 Neighboring gene microRNA 3680-2 Neighboring gene solute carrier family 7 member 5 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General protein information

Preferred Names
nuclear pore complex-interacting protein family member B12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355401.2NP_001342330.1  nuclear pore complex-interacting protein family member B12 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC133555
    Conserved Domains (3) summary
    PHA03307
    Location:666926
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam06409
    Location:46303
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:241
    AFD_class_I; Adenylate forming domain, Class I superfamily
  2. NM_001395931.1NP_001382860.1  nuclear pore complex-interacting protein family member B12 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC133555
    Conserved Domains (3) summary
    PHA03307
    Location:666926
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam06409
    Location:46303
    NPIP; Nuclear pore complex interacting protein (NPIP)
    cl17068
    Location:241
    AFD_class_I; Adenylate forming domain, Class I superfamily
  3. NM_001395932.1NP_001382861.1  nuclear pore complex-interacting protein family member B12 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC133555
    Conserved Domains (1) summary
    PHA03307
    Location:647907
    PHA03307; transcriptional regulator ICP4; Provisional

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    29483534..29506408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_029360.1: Suppressed sequence

    Description
    NG_029360.1: This RefSeq was removed because it is now thought that this locus is a transcribed gene.
  2. NR_002603.1: Suppressed sequence

    Description
    NR_002603.1: This RefSeq was permanently suppressed because there is insufficient evidence that this locus is transcribed.
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