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LOC440300 chondroitin sulfate proteoglycan 4 pseudogene [ Homo sapiens (human) ]

Gene ID: 440300, updated on 13-May-2022

Summary

Gene symbol
LOC440300
Gene description
chondroitin sulfate proteoglycan 4 pseudogene
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in prostate (RPKM 6.1), stomach (RPKM 5.1) and 23 other tissues See more
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Genomic context

See LOC440300 in Genome Data Viewer
Location:
15q25.2
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (84191848..84209294)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (82057822..82075283)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (84860600..84878046)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903544 Neighboring gene dynamin 1 pseudogene 41 Neighboring gene UBE2Q2 pseudogene 16 Neighboring gene chondroitin sulfate proteoglycan 4 pseudogene 11 Neighboring gene GOLGA2 pseudogene 7 Neighboring gene RNA, 7SL, cytoplasmic 331, pseudogene Neighboring gene uncharacterized LOC105376724 Neighboring gene golgin A6 family like 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033738.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC136698

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    84191848..84209294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791797.1 Reference GRCh38.p14 PATCHES

    Range
    797635..815082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187606.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    86187..103610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    82057822..82075283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)