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CCDC196 coiled-coil domain containing 196 [ Homo sapiens (human) ]

Gene ID: 440184, updated on 11-Jun-2021

Summary

Official Symbol
CCDC196provided by HGNC
Official Full Name
coiled-coil domain containing 196provided by HGNC
Primary source
HGNC:HGNC:20100
See related
Ensembl:ENSG00000196553
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf53; LINC00238; NCRNA00238
Expression
Restricted expression toward testis (RPKM 34.7) See more
Orthologs
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Genomic context

See CCDC196 in Genome Data Viewer
Location:
14q23.3
Exon count:
14
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (66484855..66498553)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (66953089..66965271)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene Y-box binding protein 1 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 2290 Neighboring gene gephyrin Neighboring gene probable ribosome biogenesis protein RLP24 pseudogene Neighboring gene uncharacterized LOC105370538 Neighboring gene family with sequence similarity 71 member D

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
putative coiled-coil domain-containing protein 196
Names
long intergenic non-protein coding RNA 238

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001351576.1NP_001338505.1  putative coiled-coil domain-containing protein 196

    Status: VALIDATED

    Source sequence(s)
    AL355093
    Consensus CDS
    CCDS86402.1
    Related
    ENSP00000489898.1, ENST00000636229.1
    Conserved Domains (1) summary
    cl26511
    Location:27216
    Neuromodulin_N; Gap junction protein N-terminal region

RNA

  1. NR_024338.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC033546, BC056671, BC070365
    Related
    ENST00000411796.6
  2. NR_110307.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC033546, BC056671, BI829888
  3. NR_110308.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC033546, BC056671
    Related
    ENST00000359454.10

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    66484855..66498553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024449606.1XP_024305374.1  putative coiled-coil domain-containing protein 196 isoform X4

    Conserved Domains (1) summary
    cl26511
    Location:26199
    Neuromodulin_N; Gap junction protein N-terminal region
  2. XM_024449603.1XP_024305371.1  putative coiled-coil domain-containing protein 196 isoform X1

    Conserved Domains (1) summary
    cl26252
    Location:26127
    AAA_13; AAA domain
  3. XM_024449601.1XP_024305369.1  putative coiled-coil domain-containing protein 196 isoform X1

    Conserved Domains (1) summary
    cl26252
    Location:26127
    AAA_13; AAA domain
  4. XM_024449602.1XP_024305370.1  putative coiled-coil domain-containing protein 196 isoform X1

    Conserved Domains (1) summary
    cl26252
    Location:26127
    AAA_13; AAA domain
  5. XM_024449600.1XP_024305368.1  putative coiled-coil domain-containing protein 196 isoform X1

    Conserved Domains (1) summary
    cl26252
    Location:26127
    AAA_13; AAA domain
  6. XM_024449605.1XP_024305373.1  putative coiled-coil domain-containing protein 196 isoform X3

    Related
    ENSP00000493058.1, ENST00000641713.1
    Conserved Domains (1) summary
    cl26252
    Location:26127
    AAA_13; AAA domain
  7. XM_024449607.1XP_024305375.1  putative coiled-coil domain-containing protein 196 isoform X5

    Conserved Domains (1) summary
    cl26511
    Location:26199
    Neuromodulin_N; Gap junction protein N-terminal region
  8. XM_024449611.1XP_024305379.1  putative coiled-coil domain-containing protein 196 isoform X9

  9. XM_024449604.1XP_024305372.1  putative coiled-coil domain-containing protein 196 isoform X2

    Conserved Domains (2) summary
    cl25602
    Location:24112
    DUF3552; Domain of unknown function (DUF3552)
    cl26511
    Location:27216
    Neuromodulin_N; Gap junction protein N-terminal region
  10. XM_024449613.1XP_024305381.1  putative coiled-coil domain-containing protein 196 isoform X11

    Conserved Domains (1) summary
    cl25602
    Location:24112
    DUF3552; Domain of unknown function (DUF3552)
  11. XM_024449609.1XP_024305377.1  putative coiled-coil domain-containing protein 196 isoform X7

  12. XM_024449617.1XP_024305385.1  putative coiled-coil domain-containing protein 196 isoform X15

    Conserved Domains (1) summary
    cl25602
    Location:24112
    DUF3552; Domain of unknown function (DUF3552)
  13. XM_024449610.1XP_024305378.1  putative coiled-coil domain-containing protein 196 isoform X8

    Related
    ENSP00000492931.1, ENST00000641536.1
    Conserved Domains (1) summary
    cl26252
    Location:26127
    AAA_13; AAA domain
  14. XM_024449616.1XP_024305384.1  putative coiled-coil domain-containing protein 196 isoform X14

  15. XM_024449614.1XP_024305382.1  putative coiled-coil domain-containing protein 196 isoform X12

    Conserved Domains (1) summary
    cl25602
    Location:24112
    DUF3552; Domain of unknown function (DUF3552)
  16. XM_024449615.1XP_024305383.1  putative coiled-coil domain-containing protein 196 isoform X13

    Conserved Domains (1) summary
    cl26252
    Location:26127
    AAA_13; AAA domain
  17. XM_024449608.1XP_024305376.1  putative coiled-coil domain-containing protein 196 isoform X6

    Conserved Domains (1) summary
    cl26252
    Location:26198
    AAA_13; AAA domain
  18. XM_024449612.1XP_024305380.1  putative coiled-coil domain-containing protein 196 isoform X10

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001004331.2: Suppressed sequence

    Description
    NM_001004331.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
  2. NR_024339.1: Suppressed sequence

    Description
    NR_024339.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
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