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FZD10-AS1 FZD10 antisense divergent transcript [ Homo sapiens (human) ]

Gene ID: 440119, updated on 10-Oct-2023

Summary

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Official Symbol
FZD10-AS1provided by HGNC
Official Full Name
FZD10 antisense divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:48632
See related
Ensembl:ENSG00000250208 AllianceGenome:HGNC:48632
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FZD10-DT
Expression
Broad expression in endometrium (RPKM 2.0), prostate (RPKM 1.6) and 21 other tissues See more
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Genomic context

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Location:
12q24.33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (130151593..130161678, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (130188718..130198821, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (130636138..130646223, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr12:130560143-130560670 Neighboring gene long intergenic non-protein coding RNA 2419 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130571983-130572500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130572501-130573018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130597592-130598092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130615286-130615803 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130615804-130616320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130616321-130616838 Neighboring gene uncharacterized LOC124903088 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25699 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25704 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25722 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:130645489-130646055 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:130646056-130646622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:130648209-130649204 Neighboring gene NANOG hESC enhancer GRCh37_chr12:130649290-130649835 Neighboring gene frizzled class receptor 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130667832-130668510 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25764 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130677479-130677979 Neighboring gene Sharpr-MPRA regulatory region 11699 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130682728-130683228 Neighboring gene ribosomal protein S20 pseudogene 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Regulation of Neuroregeneration by Long Noncoding RNAs. Perry RB, et al. Mol Cell, 2018 Nov 1. PMID 30401432, Free PMC Article
  2. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • FZD10 antisense RNA 1 (head to head)
  • FZD10 divergent transcript

Clone Names

  • FLJ31485, FLJ31719, FLJ41844

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033834.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026336, AK123838
    Related
    ENST00000509760.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    130151593..130161678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    130188718..130198821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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