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IFIT1B interferon induced protein with tetratricopeptide repeats 1B [ Homo sapiens (human) ]

Gene ID: 439996, updated on 7-Jun-2020

Summary

Official Symbol
IFIT1Bprovided by HGNC
Official Full Name
interferon induced protein with tetratricopeptide repeats 1Bprovided by HGNC
Primary source
HGNC:HGNC:23442
See related
Ensembl:ENSG00000204010
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IFIT1L; bA149I23.6
Expression
Restricted expression toward bone marrow (RPKM 10.2) See more
Orthologs

Genomic context

See IFIT1B in Genome Data Viewer
Location:
10q23.31
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (89378056..89385205)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (91137813..91144962)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101926887 Neighboring gene interferon induced protein with tetratricopeptide repeats 3 Neighboring gene interferon induced protein with tetratricopeptide repeats 6, pseudogene Neighboring gene interferon induced protein with tetratricopeptide repeats 1 Neighboring gene uncharacterized LOC107984251 Neighboring gene interferon induced protein with tetratricopeptide repeats 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp781M1841

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
defense response to virus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
interferon-induced protein with tetratricopeptide repeats 1B
Names
interferon-induced protein with tetratricopeptide repeats 1-like protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001010987.2NP_001010987.1  interferon-induced protein with tetratricopeptide repeats 1B

    See identical proteins and their annotated locations for NP_001010987.1

    Status: VALIDATED

    Source sequence(s)
    AL353751
    Consensus CDS
    CCDS31242.1
    UniProtKB/Swiss-Prot
    Q5T764
    Related
    ENSP00000360874.3, ENST00000371809.3
    Conserved Domains (2) summary
    sd00006
    Location:251279
    TPR; TPR repeat [structural motif]
    cl26002
    Location:36298
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    89378056..89385205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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