Format

Send to:

Choose Destination

pbdc1 polysaccharide biosynthesis domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 436977, updated on 14-Feb-2019

Summary

Official Symbol
pbdc1provided by ZNC
Official Full Name
polysaccharide biosynthesis domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-459
See related
Ensembl:ENSDARG00000057299
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
cb679; fc12c03; sb:cb679; zgc:92611; wu:fc12c03
Orthologs

Genomic context

See pbdc1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (20103254..20106024, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (20145873..20148643, complement)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (20137187..20139957, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene docking protein 2-like Neighboring gene exportin 7 Neighboring gene dematin actin binding protein Neighboring gene 5-hydroxytryptamine (serotonin) receptor 7b

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002704.2NP_001002704.1  protein PBDC1

    See identical proteins and their annotated locations for NP_001002704.1

    Status: VALIDATED

    Source sequence(s)
    CR450836, CT593443
    UniProtKB/TrEMBL
    Q6DH77
    Related
    ENSDARP00000122028.1, ENSDART00000138120.2
    Conserved Domains (1) summary
    pfam04669
    Location:35159
    Polysacc_synt_4; Polysaccharide biosynthesis

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    20103254..20106024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394779.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    146070..148840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395287.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    8842..11612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center