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cdk5r1b cyclin-dependent kinase 5, regulatory subunit 1b (p35) [ Danio rerio (zebrafish) ]

Gene ID: 436788, updated on 17-Nov-2020

Summary

Official Symbol
cdk5r1bprovided by ZNC
Official Full Name
cyclin-dependent kinase 5, regulatory subunit 1b (p35)provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-220
See related
Ensembl:ENSDARG00000045087
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
p3; p35; cdk5r; cdk5r1; zgc:92814
Orthologs

Genomic context

See cdk5r1b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (28367584..28374043)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (28252682..28255560)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (29915745..29918623)
103 previous assembly Zv9 (GCF_000002035.4) 18 NC_007129.5 (7847069..7847564, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene urotensin-2 receptor-like Neighboring gene urotensin-2 receptor 2 Neighboring gene proteasome 26S subunit, non-ATPase 11b Neighboring gene myosin 1D Neighboring gene uncharacterized LOC100538338

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
cyclin-dependent protein serine/threonine kinase activator activity IEA
Inferred from Electronic Annotation
more info
 
kinase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
amacrine cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic retina morphogenesis in camera-type eye IGI
Inferred from Genetic Interaction
more info
PubMed 
embryonic retina morphogenesis in camera-type eye IMP
Inferred from Mutant Phenotype
more info
PubMed 
phosphorylation IEA
Inferred from Electronic Annotation
more info
 
retina development in camera-type eye IMP
Inferred from Mutant Phenotype
more info
PubMed 
retina layer formation IGI
Inferred from Genetic Interaction
more info
PubMed 
retina layer formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
protein kinase 5 complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cyclin-dependent kinase 5 activator 1b
Names
cyclin-dependent kinase 5 regulatory subunit
cyclin-dependent kinase 5, regulatory subunit 1 (p35)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002515.3NP_001002515.2  cyclin-dependent kinase 5 activator 1b

    Status: VALIDATED

    Source sequence(s)
    CR391936
    UniProtKB/TrEMBL
    F1Q6W4
    Related
    ENSDARP00000066293.6, ENSDART00000066294.7

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    28367584..28374043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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