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supt4h1 SPT4 homolog, DSIF elongation factor subunit [ Danio rerio (zebrafish) ]

Gene ID: 436782, updated on 2-Oct-2018

Summary

Official Symbol
supt4h1provided by ZNC
Official Full Name
SPT4 homolog, DSIF elongation factor subunitprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-214
See related
Ensembl:ENSDARG00000113969
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
spt4; zgc:92824
Orthologs

Genomic context

See supt4h1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (3118748..3127600)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (2790582..2797868)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003334334.2 (47614..47824, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene ring finger protein 43 Neighboring gene heat shock transcription factor family member 5 Neighboring gene microRNA 142a Neighboring gene TSPO associated protein 1 Neighboring gene RIMS-binding protein 3B-like

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA polymerase II complex binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
single-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
chromatin organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of DNA-templated transcription, elongation IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
DSIF complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DSIF complex ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transcription elongation factor SPT4
Names
DRB sensitivity-inducing factor small subunit
DSIF small subunit

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002509.1NP_001002509.1  transcription elongation factor SPT4

    See identical proteins and their annotated locations for NP_001002509.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076290
    UniProtKB/Swiss-Prot
    Q6DGQ0
    Related
    ENSDARP00000147232.1, ENSDART00000179809.1
    Conserved Domains (1) summary
    cd07973
    Location:11108
    Spt4; Transcription elongation factor Spt4

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    3118748..3127600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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