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polr3h polymerase (RNA) III (DNA directed) polypeptide H [ Danio rerio (zebrafish) ]

Gene ID: 436749, updated on 23-Jun-2022

Summary

Official Symbol
polr3hprovided by ZNC
Official Full Name
polymerase (RNA) III (DNA directed) polypeptide Hprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-179
See related
Ensembl:ENSDARG00000102590 AllianceGenome:ZFIN:ZDB-GENE-040718-179
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92878
Summary
Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Acts upstream of or within hematopoietic stem cell homeostasis. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Is expressed in hematopoietic system. Orthologous to human POLR3H (RNA polymerase III subunit H). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See polr3h in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (5019502..5030089, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (5109661..5120248, complement)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (5689032..5699669)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene phosphomannomutase 1-like Neighboring gene GTPase IMAP family member 8-like Neighboring gene protein Tob2 Neighboring gene cold shock domain containing C2, RNA binding b Neighboring gene TEF transcription factor, PAR bZIP family member b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
DNA-directed RNA polymerase III subunit RPC8
NP_001002476.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002476.1NP_001002476.1  DNA-directed RNA polymerase III subunit RPC8

    See identical proteins and their annotated locations for NP_001002476.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076336
    UniProtKB/TrEMBL
    Q6DGK6
    Related
    ENSDARP00000138726.1, ENSDART00000167153.2
    Conserved Domains (3) summary
    COG1095
    Location:1212
    RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
    cd04330
    Location:281
    RNAP_III_Rpc25_N; RNAP_III_Rpc25_N: Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, ...
    pfam08292
    Location:79212
    RNA_pol_Rbc25; RNA polymerase III subunit Rpc25

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    5019502..5030089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)