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LOC4352894 probable ubiquitin-conjugating enzyme E2 18 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352894, updated on 13-Jul-2024

Summary

Gene symbol
LOC4352894
Gene description
probable ubiquitin-conjugating enzyme E2 18
Locus tag
OSNPB_120636800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 43.0), roots after flowering (RPKM 41.3) and 6 other tissues See more
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Genomic context

See LOC4352894 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (28013811..28017095, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (27295396..27298738, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4352891 Neighboring gene uncharacterized LOC9267278 Neighboring gene purple acid phosphatase 2 Neighboring gene purple acid phosphatase 2

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
probable ubiquitin-conjugating enzyme E2 18
Names
Os12g0636800
ubiquitin-conjugating enzyme E2 W

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    28013811..28017095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762642.3XP_015618128.1  probable ubiquitin-conjugating enzyme E2 18

    UniProtKB/TrEMBL
    B8BN69, B9GEG3, Q2QLM1
    Conserved Domains (1) summary
    pfam00179
    Location:19158
    UQ_con; Ubiquitin-conjugating enzyme