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LOC4352635 uncharacterized LOC4352635 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352635, updated on 12-Jul-2024
Gene symbol
LOC4352635
Gene description
uncharacterized LOC4352635
Locus tag
OSNPB_120580500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24756111..24758013)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (24045174..24047098)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene TATA-binding protein 2-like Neighboring gene probable polyamine transporter At3g19553 Neighboring gene uncharacterized LOC4352636 Neighboring gene probable E3 ubiquitin-protein ligase XERICO

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
uncharacterized protein LOC4352635
Names
Os12g0580500

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    24756111..24758013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765230.3 → XP_015620716.1  uncharacterized protein LOC4352635

    UniProtKB/TrEMBL
    A0A0P0YBN8, Q0IMB6, Q2QN39
    Conserved Domains (1) summary
    pfam12767
    Location:12 → 269
    SAGA-Tad1; Transcriptional regulator of RNA polII, SAGA, subunit
Nucleotide Protein
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