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LOC4352411 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352411, updated on 12-Jul-2024
Gene symbol
LOC4352411
Gene description
bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic
Locus tag
OSNPB_120534000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4352411 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (21902702..21907539, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (21230219..21235128, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4352409 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene uncharacterized LOC4352412 Neighboring gene acyl carrier protein 1, chloroplastic

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-dehydroquinate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables shikimate 3-dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chorismate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in shikimate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic
Names
Os12g0534000

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    21902702..21907539 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765195.3 → XP_015620681.1  bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic isoform X2

    Conserved Domains (4) summary
    cd01065
    Location:396 → 511
    NAD_bind_Shikimate_DH; NAD(P) binding domain of Shikimate dehydrogenase
    PLN02520
    Location:20 → 526
    PLN02520; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
    pfam01487
    Location:50 → 241
    DHquinase_I; Type I 3-dehydroquinase
    pfam08501
    Location:255 → 335
    Shikimate_dh_N; Shikimate dehydrogenase substrate binding domain

  2. XM_015765198.3 → XP_015620684.1  bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic isoform X4

    Conserved Domains (4) summary
    cd01065
    Location:396 → 511
    NAD_bind_Shikimate_DH; NAD(P) binding domain of Shikimate dehydrogenase
    PLN02520
    Location:20 → 522
    PLN02520; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
    pfam01487
    Location:50 → 241
    DHquinase_I; Type I 3-dehydroquinase
    pfam08501
    Location:255 → 335
    Shikimate_dh_N; Shikimate dehydrogenase substrate binding domain

  3. XM_015765194.3 → XP_015620680.1  bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic isoform X1

    Conserved Domains (1) summary
    PLN02520
    Location:20 → 529
    PLN02520; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

  4. XM_015765197.3 → XP_015620683.1  bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic isoform X3

    Conserved Domains (1) summary
    PLN02520
    Location:20 → 525
    PLN02520; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Nucleotide Protein
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