Format

Send to:

Choose Destination

LOC4352257 DNA repair protein RAD51 homolog B [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352257, updated on 4-Oct-2018

Summary

Gene symbol
LOC4352257
Gene description
DNA repair protein RAD51 homolog B
Locus tag
OSNPB_120497300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Rad51; OsRad51A2
Expression
Biased expression in flowers (RPKM 1.1), flower buds (RPKM 1.0) and 3 other tissues See more

Genomic context

See LOC4352257 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (18876056..18879209)

Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene putative FBD-associated F-box protein At5g56440 Neighboring gene GRF1-interacting factor 3 Neighboring gene translation initiation factor eIF-2B subunit alpha Neighboring gene uncharacterized protein YnbD-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Homologous recombination, organism-specific biosystem (from KEGG)
    Homologous recombination, organism-specific biosystemHomologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves...
  • Homologous recombination, conserved biosystem (from KEGG)
    Homologous recombination, conserved biosystemHomologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves...

General gene information

Homology

Gene Ontology Provided by Gramene

Function Evidence Code Pubs
nucleotide binding RCA
inferred from Reviewed Computational Analysis
more info
 

General protein information

Preferred Names
DNA repair protein RAD51 homolog B
Names
Os12g0497300

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

    Range
    18876056..18879209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763942.2XP_015619428.1  DNA repair protein RAD51 homolog B

    UniProtKB/TrEMBL
    Q8RV34
    Conserved Domains (3) summary
    PLN03186
    Location:23341
    PLN03186; DNA repair protein RAD51 homolog; Provisional
    cd01123
    Location:105336
    Rad51_DMC1_radA; Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a ...
    pfam14520
    Location:3183
    HHH_5; Helix-hairpin-helix domain
Support Center