U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4351779 2-dehydro-3-deoxyphosphooctonate aldolase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351779, updated on 16-Jun-2026
Gene symbol
LOC4351779
Gene description
2-dehydro-3-deoxyphosphooctonate aldolase 1
Locus tag
OSNPB_120210800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Try the new Gene page
Try the new Transcripts and proteins table
See LOC4351779 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (5835285..5841078)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (5801427..5807236)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278307 Neighboring gene uncharacterized LOC136354646 Neighboring gene uncharacterized LOC107279741 Neighboring gene uncharacterized LOC136354772

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-deoxy-8-phosphooctulonate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
2-dehydro-3-deoxyphosphooctonate aldolase 1
Names
Os12g0210800
putative 2-dehydro-3-deoxyphosphooctonate aldolase

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    5835285..5841078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763128.2 → XP_015618614.1  2-dehydro-3-deoxyphosphooctonate aldolase 1

    UniProtKB/TrEMBL
    Q0IPE5, Q84P87
    Conserved Domains (1) summary
    PLN03033
    Location:2 → 291
    PLN03033; 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials