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LOC4351712 disease resistance protein RGA5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351712, updated on 3-Dec-2024
Gene symbol
LOC4351712
Gene description
disease resistance protein RGA5-like
Locus tag
OSNPB_120194100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4351712 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (4846206..4854050, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (4814120..4822375, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354768 Neighboring gene uncharacterized LOC9269300 Neighboring gene uncharacterized LOC136354669 Neighboring gene disease resistance protein RGA5-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
disease resistance protein RGA5-like

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    4846206..4854050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765244.3 → XP_015620730.1  disease resistance protein RGA5-like

    UniProtKB/TrEMBL
    A2ZIU9
    Conserved Domains (4) summary
    cd14798
    Location:7 → 128
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:589 → 611
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:579 → 741
    internalin_A; class 1 internalin InlA
    pfam00931
    Location:164 → 405
    NB-ARC; NB-ARC domain

  2. XM_066306607.1 → XP_066162704.1  disease resistance protein RGA5-like

    UniProtKB/TrEMBL
    A2ZIU9

  3. XM_015765241.3 → XP_015620727.1  disease resistance protein RGA5-like

    UniProtKB/TrEMBL
    A2ZIU9
    Conserved Domains (4) summary
    cd14798
    Location:7 → 128
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:589 → 611
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:579 → 741
    internalin_A; class 1 internalin InlA
    pfam00931
    Location:164 → 405
    NB-ARC; NB-ARC domain

  4. XM_015765240.3 → XP_015620726.1  disease resistance protein RGA5-like

    UniProtKB/TrEMBL
    A2ZIU9
    Conserved Domains (4) summary
    cd14798
    Location:7 → 128
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:589 → 611
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:579 → 741
    internalin_A; class 1 internalin InlA
    pfam00931
    Location:164 → 405
    NB-ARC; NB-ARC domain

  5. XM_015765238.3 → XP_015620724.1  disease resistance protein RGA5-like

    UniProtKB/TrEMBL
    A2ZIU9
    Conserved Domains (4) summary
    cd14798
    Location:7 → 128
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:589 → 611
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:579 → 741
    internalin_A; class 1 internalin InlA
    pfam00931
    Location:164 → 405
    NB-ARC; NB-ARC domain

  6. XM_015765239.3 → XP_015620725.1  disease resistance protein RGA5-like

    UniProtKB/TrEMBL
    A2ZIU9
    Conserved Domains (4) summary
    cd14798
    Location:7 → 128
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:589 → 611
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:579 → 741
    internalin_A; class 1 internalin InlA
    pfam00931
    Location:164 → 405
    NB-ARC; NB-ARC domain

  7. XM_015765245.3 → XP_015620731.1  disease resistance protein RGA5-like

    UniProtKB/TrEMBL
    A2ZIU9
    Conserved Domains (4) summary
    cd14798
    Location:7 → 128
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:589 → 611
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:579 → 741
    internalin_A; class 1 internalin InlA
    pfam00931
    Location:164 → 405
    NB-ARC; NB-ARC domain
Nucleotide Protein
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