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LOC4351694 photosystem I reaction center subunit N, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351694, updated on 12-Jul-2024
Gene symbol
LOC4351694
Gene description
photosystem I reaction center subunit N, chloroplastic
Locus tag
OSNPB_120189400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (4536298..4537370)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (4506696..4507770)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354737 Neighboring gene carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic Neighboring gene probable indole-3-pyruvate monooxygenase YUCCA11 Neighboring gene uncharacterized LOC4351696

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chloroplast photosystem I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
photosystem I reaction center subunit N, chloroplastic
Names
Os12g0189400

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    4536298..4537370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764712.3 → XP_015620198.1  photosystem I reaction center subunit N, chloroplastic

    UniProtKB/TrEMBL
    B8BNI3, Q0IPL2, Q2QWN3
    Conserved Domains (1) summary
    PLN00054
    Location:14 → 149
    PLN00054; photosystem I reaction center subunit N; Provisional
Nucleotide Protein
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