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LOC4351402 alpha-L-arabinofuranosidase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351402, updated on 16-Jun-2026
Gene symbol
LOC4351402
Gene description
alpha-L-arabinofuranosidase 1
Locus tag
OSNPB_120128800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 12
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1392050..1400674)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1367594..1376245)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit TIM8 Neighboring gene alpha-L-arabinofuranosidase 1 Neighboring gene uncharacterized LOC107277182 Neighboring gene uncharacterized LOC9272112

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
alpha-L-arabinofuranosidase 1
Names
Os12g0128800

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    1392050..1400674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026021974.2 → XP_025877759.1  alpha-L-arabinofuranosidase 1 isoform X1

    UniProtKB/TrEMBL
    Q0IQD3
    Conserved Domains (1) summary
    smart00813
    Location:462 → 644
    Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus

  2. XM_026021975.2 → XP_025877760.1  alpha-L-arabinofuranosidase 1 isoform X2

    UniProtKB/TrEMBL
    Q0IQD3
    Conserved Domains (1) summary
    smart00813
    Location:438 → 620
    Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus
Nucleotide Protein
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