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LOC4351296 transcription factor SCREAM2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351296, updated on 12-Jul-2024
Gene symbol
LOC4351296
Gene description
transcription factor SCREAM2
Locus tag
OSNPB_120111400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (623399..626519)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (599591..602661)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351294 Neighboring gene transfer RNA proline (anticodon CGG) Neighboring gene BTB/POZ domain-containing protein At1g01640 Neighboring gene uncharacterized LOC4351298

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
transcription factor SCREAM2; transcription factor bHLH61; uncharacterized protein LOC4351296
Names
Os12g0111400

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    623399..626519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763492.3 → XP_015618978.1  transcription factor SCREAM2 isoform X3

    UniProtKB/TrEMBL
    A3CEA5
    Conserved Domains (1) summary
    cl00081
    Location:12 → 61
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  2. XM_066306510.1 → XP_066162607.1  transcription factor bHLH61 isoform X1

  3. XM_066306511.1 → XP_066162608.1  transcription factor bHLH61 isoform X2

  4. XM_015763494.3 → XP_015618980.1  uncharacterized protein LOC4351296 isoform X4

    UniProtKB/TrEMBL
    Q0IQM9, Q2QYP2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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