LOC4351061 translationally-controlled tumor protein homolog [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4351061
Gene description: translationally-controlled tumor protein homolog
Locus tag: OSNPB_110660500
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: TCTP
Expression: Ubiquitous expression in mature seeds (RPKM 3581.9), roots before flowering (RPKM 1937.9) and 6 other tissues See more
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Genomic context

Location:: chromosome: 11

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	11	NC_029266.1 (26510958..26513150, complement)

Chromosome 11 - NC_029266.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: translationally-controlled tumor protein homolog

Names: 21 kDa protein; 21kd polypeptide; LOC_Os11g43900; translational controlled tumor-like protein; translational coutrolled tumor-like protein; translationally controlled tumor protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001404571.1 → NP_001391500.1 translationally-controlled tumor protein homolog

Status: VALIDATED

Source sequence(s)

AK105453, BT131145, CF307722, CF307723

UniProtKB/Swiss-Prot

P35681, Q2R036

UniProtKB/TrEMBL

A3CDM6, Q0IR97

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029266.1 Reference IRGSP-1.0 Primary Assembly

Range

26510958..26513150 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015761574.2 → XP_015617060.1 translationally-controlled tumor protein homolog

UniProtKB/Swiss-Prot

P35681

UniProtKB/TrEMBL

Q0IR97

Conserved Domains (1) summary

pfam00838
Location:1 → 163

TCTP; Translationally controlled tumor protein