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LOC4350923 DNA repair protein RAD51 homolog A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350923, updated on 4-Oct-2018

Summary

Gene symbol
LOC4350923
Gene description
DNA repair protein RAD51 homolog A
Locus tag
OSNPB_110615800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Rad51; OsRad51A1
Expression
Ubiquitous expression in leaves before flowering (RPKM 4.5), flower buds (RPKM 4.0) and 6 other tissues See more

Genomic context

See LOC4350923 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23942674..23946590)

Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4350921 Neighboring gene proteasome subunit alpha type-5-like Neighboring gene uncharacterized LOC4350924 Neighboring gene translation initiation factor eIF-2B subunit alpha-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Homologous recombination, organism-specific biosystem (from KEGG)
    Homologous recombination, organism-specific biosystemHomologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves...
  • Homologous recombination, conserved biosystem (from KEGG)
    Homologous recombination, conserved biosystemHomologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves...

General gene information

Homology

Gene Ontology Provided by Gramene

Function Evidence Code Pubs
ATP binding RCA
inferred from Reviewed Computational Analysis
more info
 
DNA binding RCA
inferred from Reviewed Computational Analysis
more info
 
DNA-dependent ATPase activity RCA
inferred from Reviewed Computational Analysis
more info
 
Process Evidence Code Pubs
DNA recombination RCA
inferred from Reviewed Computational Analysis
more info
 
DNA repair RCA
inferred from Reviewed Computational Analysis
more info
 

General protein information

Preferred Names
DNA repair protein RAD51 homolog A
Names
Os11g0615800

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

    Range
    23942674..23946590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762288.2XP_015617774.1  DNA repair protein RAD51 homolog A

    UniProtKB/TrEMBL
    Q8SBB9
    Conserved Domains (3) summary
    PLN03186
    Location:18339
    PLN03186; DNA repair protein RAD51 homolog; Provisional
    cd01123
    Location:102334
    Rad51_DMC1_radA; Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a ...
    pfam14520
    Location:2880
    HHH_5; Helix-hairpin-helix domain
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