U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

yata yata [ Drosophila melanogaster (fruit fly) ]

Gene ID: 43508, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
yataprovided by FlyBase
Official Full Name
yataprovided by FlyBase
Primary source
FLYBASE:FBgn0260990
Locus tag
Dmel_CG1973
See related
AllianceGenome:FB:FBgn0260990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG1973; Dmel\CG1973; Yata
Summary
Predicted to enable ATP binding activity. Is expressed in adult head. Used to study autosomal recessive spinocerebellar ataxia 21. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 21. Orthologous to human SCYL1 (SCY1 like pseudokinase 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See yata in Genome Data Viewer
Location:
99B10-99B10; 3-99 cM
Exon count:
9
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (29749219..29754528)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (25574941..25580250)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR46109 Neighboring gene ATP synthase, gamma subunit Neighboring gene Integrator 11 Neighboring gene long non-coding RNA:CR44953 Neighboring gene kayak Neighboring gene long non-coding RNA:CR46110

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Analysis of a cellular structure observed in the compound eyes of Drosophila white; yata mutants and white mutants. Arimoto E, et al. Biol Open, 2020 Jan 13. PMID 31862863, Free PMC Article
  2. Role of the Drosophila YATA protein in the proper subcellular localization of COPI revealed by in vivo analysis. Saito M, et al. Genes Genet Syst, 2021 Mar 23. PMID 33583916
  3. Drosophila embryonic 'fibroblasts': extending mutant analysis in vitro. Simcox AA, et al. Fly (Austin), 2008 Nov-Dec. PMID 19077546, Free PMC Article
  4. Suppression of the synaptic localization of a subset of proteins including APP partially ameliorates phenotypes of the Drosophila Alzheimer's disease model. Furotani K, et al. PLoS One, 2018. PMID 30226901, Free PMC Article
  5. Loss of yata, a novel gene regulating the subcellular localization of APPL, induces deterioration of neural tissues and lifespan shortening. Sone M, et al. PLoS One, 2009. PMID 19209226, Free PMC Article

See all (47) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Role of the Drosophila YATA protein in the proper subcellular localization of COPI revealed by in vivo analysis.
    Title: Role of the Drosophila YATA protein in the proper subcellular localization of COPI revealed by in vivo analysis.
  2. yata mutants showed impaired subcellular localization of APPL.
    Title: Loss of yata, a novel gene regulating the subcellular localization of APPL, induces deterioration of neural tissues and lifespan shortening.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
NOT enables protein kinase activity IKR
Inferred from Key Residues
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
yata
Names
CG1973-PA
CG1973-PB
yata-PA
yata-PB

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    29749219..29754528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001276153.1 → NP_001263082.1  yata, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001263082.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VAH7
    Conserved Domains (4) summary
    pfam00069
    Location:34 → 257
    Pkinase; Protein kinase domain
    pfam13300
    Location:838 → 859
    DUF4078; Domain of unknown function (DUF4078)
    sd00044
    Location:351 → 375
    HEAT; HEAT repeat [structural motif]
    cl21453
    Location:30 → 294
    PKc_like; Protein Kinases, catalytic domain

  2. NM_143465.2 → NP_651722.1  yata, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651722.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VAH7
    Related
    FBpp0084843
    Conserved Domains (4) summary
    pfam00069
    Location:34 → 257
    Pkinase; Protein kinase domain
    pfam13300
    Location:838 → 859
    DUF4078; Domain of unknown function (DUF4078)
    sd00044
    Location:351 → 375
    HEAT; HEAT repeat [structural motif]
    cl21453
    Location:30 → 294
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VAH7 Q9VAH7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools