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LOC4349638 protein SCARECROW 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349638, updated on 3-Dec-2024
Gene symbol
LOC4349638
Gene description
protein SCARECROW 1-like
Locus tag
OSNPB_110124300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SCR1; OsSCR1; OsJ_031458
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See LOC4349638 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (1164028..1167632)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1119520..1122896)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 32 homolog 2 Neighboring gene cation/H(+) antiporter 15 Neighboring gene calcium uniporter protein 6, mitochondrial Neighboring gene probable galacturonosyltransferase 7

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A plausible mechanism, based upon Short-Root movement, for regulating the number of cortex cell layers in roots. Wu S, et al. Proc Natl Acad Sci U S A, 2014 Nov 11. PMID 25352666, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in asymmetric cell division IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in bundle sheath cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gravitropism IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leaf development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maintenance of protein location in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in radial pattern formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein SCARECROW 1
Names
LOC_Os11g03110

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423138.1 → NP_001410067.1  protein SCARECROW 1

    Status: VALIDATED

    Source sequence(s)
    AK073467, AP014967
    UniProtKB/Swiss-Prot
    A0A0P0XY98, A2ZAX5, A3C836, Q2RB59

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    1164028..1167632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2RB59.1 GenPept UniProtKB/Swiss-Prot:Q2RB59

Gene LinkOut

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Molecular Biology Databases
Research Materials