U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4349389 phosphatidylglycerophosphate phosphatase PTPMT1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349389, updated on 16-Jun-2026
Gene symbol
LOC4349389
Gene description
phosphatidylglycerophosphate phosphatase PTPMT1
Locus tag
OSNPB_100561900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Try the new Gene page
Try the new Transcripts and proteins table
See LOC4349389 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22853305..22857191, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22161118..22165059, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130932202 Neighboring gene homeobox-leucine zipper protein HOX1-like Neighboring gene cell wall protein RBR3 Neighboring gene transcription factor MYBS2-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
phosphatidylglycerophosphate phosphatase PTPMT1
Names
Os10g0561900
putative dual specificity protein phosphatase DSP8

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    22853305..22857191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759386.2 → XP_015614872.1  phosphatidylglycerophosphate phosphatase PTPMT1

    UniProtKB/TrEMBL
    A0A0N7KS79, A0A5S6RA80, A2ZA88, B7ETY4, Q7XC53, Q9AUS9
    Conserved Domains (1) summary
    cd14524
    Location:86 → 229
    PTPMT1; protein-tyrosine phosphatase mitochondrial 1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials