U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4348792 plant intracellular Ras-group-related LRR protein 8-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348792, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC4348792
Gene description
plant intracellular Ras-group-related LRR protein 8-like
Locus tag
OSNPB_100456200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
IRL8; OsIRL8
Expression
Ubiquitous expression in roots before flowering (RPKM 18.3), flower buds (RPKM 15.8) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (16665816..16673476, complement)

Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene protein ENHANCED DISEASE RESISTANCE 2 Neighboring gene NADPH-dependent aldehyde reductase-like protein, chloroplastic Neighboring gene uncharacterized LOC112936581 Neighboring gene uncharacterized LOC4348793

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
plant intracellular Ras-group-related LRR protein 8
Names
LOC_Os10g31790
intracellular Ras-group-related LRR protein 8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423054.1 → NP_001409983.1  plant intracellular Ras-group-related LRR protein 8

    Status: VALIDATED

    Source sequence(s)
    CB652355, CF310593, CI447291, CI627182
    UniProtKB/Swiss-Prot
    Q337P4, Q7XDQ7

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

    Range
    16665816..16673476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759190.2 → XP_015614676.1  plant intracellular Ras-group-related LRR protein 8

    UniProtKB/Swiss-Prot
    Q7XDQ7
    Conserved Domains (3) summary
    COG4886
    Location:154 → 342
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:157 → 178
    LRR_RI; leucine-rich repeat [structural motif]
    cl28922
    Location:12 → 82
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XDQ7.1 GenPept UniProtKB/Swiss-Prot:Q7XDQ7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials