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LOC4347985 U1 small nuclear ribonucleoprotein 70 kDa [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347985, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4347985
Gene description
U1 small nuclear ribonucleoprotein 70 kDa
Locus tag
OSNPB_100115600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 103.1), leaves before flowering (RPKM 87.5) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (1013236..1018478, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (1007650..1012940, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene barley B recombinant-like protein C Neighboring gene peamaclein Neighboring gene uncharacterized LOC9272635 Neighboring gene pentatricopeptide repeat-containing protein At5g62370

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Alternative splicing expression of U1 snRNP 70K gene is evolutionary conserved between different plant species. Gupta S, et al. DNA Seq, 2006 Aug. PMID 17312944
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U1 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U1 small nuclear ribonucleoprotein 70 kDa
Names
Os10g0115600
U1 small nuclear ribonucleoprotein 70K

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    1013236..1018478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758798.3 → XP_015614284.1  U1 small nuclear ribonucleoprotein 70 kDa

    UniProtKB/TrEMBL
    Q0IZA1, Q2EIH1, Q33BE1
    Conserved Domains (2) summary
    pfam12220
    Location:41 → 129
    U1snRNP70_N; U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
    cd12236
    Location:138 → 228
    RRM_snRNP70; RNA recognition motif (RRM) found in U1 small nuclear ribonucleoprotein 70 kDa (U1-70K) and similar proteins
Nucleotide Protein
Heading Accession and Version

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