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LOC4347859 wall-associated receptor kinase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347859, updated on 12-Jul-2024
Gene symbol
LOC4347859
Gene description
wall-associated receptor kinase 5
Locus tag
OSNPB_090562600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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See LOC4347859 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26793384..26796142)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22348450..22351523)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351793 Neighboring gene F-box/FBD/LRR-repeat protein At1g78750 Neighboring gene senescence-specific cysteine protease SAG12 Neighboring gene uncharacterized LOC112936417

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
wall-associated receptor kinase 5
Names
Os09g0562600
P0635G10.28
putative wall-associated kinase 4

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    26793384..26796142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755784.3 → XP_015611270.1  wall-associated receptor kinase 5

    UniProtKB/TrEMBL
    A0A0P0XQW3, Q0IZL6, Q653C0
    Conserved Domains (3) summary
    smart00179
    Location:346 → 387
    EGF_CA; Calcium-binding EGF-like domain
    cd14066
    Location:481 → 746
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    pfam13947
    Location:40 → 102
    GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
Nucleotide Protein
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