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LOC4347418 tonoplast dicarboxylate transporter [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347418, updated on 9-Aug-2018

Summary

Gene symbol
LOC4347418
Gene description
tonoplast dicarboxylate transporter
Locus tag
OSNPB_090484900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 11.1), flower buds (RPKM 2.9) and 6 other tissues See more

Genomic context

See LOC4347418 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18715291..18718865)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase UPL5 Neighboring gene pirin-like protein Neighboring gene zinc finger protein WIP2 Neighboring gene uncharacterized LOC4347421

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by Gramene

Component Evidence Code Pubs
membrane RCA
inferred from Reviewed Computational Analysis
more info
 

General protein information

Preferred Names
tonoplast dicarboxylate transporter
Names
Os09g0484900

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    18715291..18718865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757123.2XP_015612609.1  tonoplast dicarboxylate transporter

    UniProtKB/TrEMBL
    Q0J0T0
    Conserved Domains (2) summary
    COG0471
    Location:53532
    CitT; Di- and tricarboxylate transporter [Carbohydrate transport and metabolism]
    cd01115
    Location:74533
    SLC13_permease; Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is ...
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