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LOC4347365 fasciclin-like arabinogalactan protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347365, updated on 17-Jul-2024
Gene symbol
LOC4347365
Gene description
fasciclin-like arabinogalactan protein 1
Locus tag
OSNPB_090476800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (22641188..22642377)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18257649..18258838)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347363 Neighboring gene uncharacterized LOC9267800 Neighboring gene uncharacterized LOC136351722 Neighboring gene uncharacterized LOC4347366

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
fasciclin-like arabinogalactan protein 1
Names
Os09g0476800
P0556A05.20
fasciclin-like arabinogalactan-protein 2-like

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    22641188..22642377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755845.2 → XP_015611331.1  fasciclin-like arabinogalactan protein 1

    UniProtKB/TrEMBL
    A0A0P0XN58, A2Z2C2, Q651Y5
    Conserved Domains (1) summary
    pfam02469
    Location:54 → 188
    Fasciclin; Fasciclin domain
Nucleotide Protein
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