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LOC4347166 photosystem I chlorophyll a/b-binding protein 6, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347166, updated on 17-Jul-2024
Gene symbol
LOC4347166
Gene description
photosystem I chlorophyll a/b-binding protein 6, chloroplastic
Locus tag
OSNPB_090439500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1344_B01.16
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See LOC4347166 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (20667837..20670838)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16287868..16290863)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein TIFY 10c-like Neighboring gene probable polygalacturonase Neighboring gene exocyst complex component EXO70A1 Neighboring gene uncharacterized LOC4347168

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis, light harvesting in photosystem I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
photosystem I chlorophyll a/b-binding protein 6, chloroplastic
Names
Os09g0439500
P0556H01.32
chlorophyll a-b binding protein, chloroplastic
putative chlorophyll a/b-binding protein type II

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    20667837..20670838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756873.3 → XP_015612359.1  photosystem I chlorophyll a/b-binding protein 6, chloroplastic

    UniProtKB/TrEMBL
    B8BCF0, Q0J1H6, Q69P91
    Conserved Domains (1) summary
    PLN00098
    Location:1 → 264
    PLN00098; light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Nucleotide Protein
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