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LOC4347000 protein TIFY 6b-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347000, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4347000
Gene description
protein TIFY 6b-like
Locus tag
OSNPB_090401300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
JAZ4; OsJAZ4; OsJAZ8; TIFY6B; OsTIFY6b; OsJ_29291
Expression
Broad expression in roots before flowering (RPKM 161.9), flowers (RPKM 59.7) and 5 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (14056100..14060320, complement)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB20 Neighboring gene ABC transporter G family member 17 Neighboring gene TPR repeat-containing thioredoxin TDX-like Neighboring gene plant UBX domain-containing protein 2 Neighboring gene protein XRI1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The OsGSK2 Kinase Integrates Brassinosteroid and Jasmonic Acid Signaling by Interacting with OsJAZ4. He Y, et al. Plant Cell, 2020 Sep. PMID 32586913, Free PMC Article
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The OsGSK2 Kinase Integrates Brassinosteroid and Jasmonic Acid Signaling by Interacting with OsJAZ4.
    Title: The OsGSK2 Kinase Integrates Brassinosteroid and Jasmonic Acid Signaling by Interacting with OsJAZ4.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of jasmonic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to wounding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein TIFY 6b
Names
Jasmonate ZIM domain-containing protein 4
LOC_Os09g23660
P0650H04.35-1
P0650H04.35-2
P0650H04.35-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403749.1 → NP_001390678.1  protein TIFY 6b

    Status: VALIDATED

    Source sequence(s)
    AK065170, CB659310, CB659311, CI430203, CI664267
    UniProtKB/Swiss-Prot
    A0A0P0XLY1, Q6ES51

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    14056100..14060320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756916.2 → XP_015612402.1  protein TIFY 6b

    UniProtKB/Swiss-Prot
    Q6ES51
    Conserved Domains (2) summary
    pfam06200
    Location:188 → 221
    tify; tify domain
    pfam09425
    Location:335 → 359
    CCT_2; Divergent CCT motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ES51.1 GenPept UniProtKB/Swiss-Prot:Q6ES51

Gene LinkOut

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Molecular Biology Databases