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LOC4346967 uncharacterized LOC4346967 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346967, updated on 3-Dec-2024
Gene symbol
LOC4346967
Gene description
uncharacterized LOC4346967
Locus tag
OSNPB_090394100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
B1339H09.2
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See LOC4346967 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (17992767..17998379, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (13626097..13629907, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351710 Neighboring gene uncharacterized LOC112936455 Neighboring gene endoglucanase 22-like Neighboring gene uncharacterized LOC136351934

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables malonyl-CoA decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in malonyl-CoA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisomal matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
uncharacterized protein LOC4346967
Names
OSJNOa018M17.5
Os09g0394100
malonyl-CoA decarboxylase, mitochondrial
putative Malonyl-CoA decarboxylase, mitochondrial precursor (MCD)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    17992767..17998379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795666.3 → XP_015651152.1  uncharacterized protein LOC4346967 isoform X2

    UniProtKB/TrEMBL
    A0A0P0XLX2, Q6H400
    Conserved Domains (1) summary
    pfam05292
    Location:137 → 484
    MCD; Malonyl-CoA decarboxylase (MCD)

  2. XM_066304277.1 → XP_066160374.1  uncharacterized protein LOC4346967 isoform X1

    UniProtKB/TrEMBL
    A0A0P0XLX2, Q6H400

RNA

  1. XR_010735098.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials