U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4346745 pentatricopeptide repeat-containing protein At4g02750 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346745, updated on 3-Dec-2024
Gene symbol
LOC4346745
Gene description
pentatricopeptide repeat-containing protein At4g02750
Locus tag
OSNPB_090327200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0706E03.7
NEW
Try the new Gene table
Try the new Transcript table
See LOC4346745 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (13977342..13983617, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (9646767..9650598, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein transport protein yos1 Neighboring gene eukaryotic translation initiation factor 5 Neighboring gene uncharacterized LOC4346743 Neighboring gene ras-related protein RABA1f Neighboring gene bifunctional protein FolD 1, mitochondrial Neighboring gene putative glucose-6-phosphate 1-epimerase

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
pentatricopeptide repeat-containing protein At4g02750
Names
Os09g0327200
putative pentatricopeptide (PPR) repeat-containing protein

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    13977342..13983617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066304196.1 → XP_066160293.1  pentatricopeptide repeat-containing protein At4g02750

    UniProtKB/TrEMBL
    A0A0P0XLD7, A2YZX1, Q6K2P5

  2. XM_066304195.1 → XP_066160292.1  pentatricopeptide repeat-containing protein At4g02750

    UniProtKB/TrEMBL
    A0A0P0XLD7, A2YZX1, Q6K2P5

  3. XM_066304197.1 → XP_066160294.1  pentatricopeptide repeat-containing protein At4g02750

    UniProtKB/TrEMBL
    A0A0P0XLD7, A2YZX1, Q6K2P5

  4. XM_015795703.3 → XP_015651189.1  pentatricopeptide repeat-containing protein At4g02750

    UniProtKB/TrEMBL
    A0A0P0XLD7, A2YZX1, Q6K2P5
    Conserved Domains (2) summary
    PLN03077
    Location:42 → 753
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:195 → 222
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials