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LOC4346376 DNA repair protein RAD51 homolog 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346376, updated on 12-Jul-2024
Gene symbol
LOC4346376
Gene description
DNA repair protein RAD51 homolog 4
Locus tag
OSNPB_090104200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RAD51D; P0584D02.2
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Try the new Transcripts and proteins table
See LOC4346376 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (4504117..4509919, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (485012..490861, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP53 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP53 Neighboring gene uncharacterized LOC4346377 Neighboring gene uncharacterized LOC112936426

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.). Byun MY, et al. Plant J, 2014 Jul. PMID 24840804
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA strand invasion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rad51B-Rad51C-Rad51D-XRCC2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
DNA repair protein RAD51 homolog 4
Names
OSJNBa0006G10.10
Os09g0104200
Trad-like protein

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    4504117..4509919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756936.3 → XP_015612422.1  DNA repair protein RAD51 homolog 4 isoform X1

    UniProtKB/TrEMBL
    A0A075DNI2, Q69KV4, Q69NT6
    Conserved Domains (1) summary
    cd19489
    Location:64 → 268
    Rad51D; RAD51D recombinase

  2. XM_015756937.3 → XP_015612423.1  DNA repair protein RAD51 homolog 4 isoform X2

    UniProtKB/TrEMBL
    A0A075DNI1
    Conserved Domains (1) summary
    cd19489
    Location:37 → 241
    Rad51D; RAD51D recombinase
Nucleotide Protein
Heading Accession and Version

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