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LOC4346374 pre-mRNA-splicing factor 38 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346374, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4346374
Gene description
pre-mRNA-splicing factor 38
Locus tag
OSNPB_090103600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 31.7), flower buds (RPKM 31.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (4463961..4470782, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (444799..451702, complement)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346372 Neighboring gene RNA pseudouridine synthase 4, mitochondrial-like Neighboring gene CAX-interacting protein 4 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP53

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 38
Names
OSJNBa0006G10.4
Os09g0103600
P0414D03.36
pre-mRNA splicing factor PRP38 protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    4463961..4470782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757092.3 → XP_015612578.1  pre-mRNA-splicing factor 38

    UniProtKB/TrEMBL
    A0A0P0XID9, B8BCS7, Q69K06
    Conserved Domains (1) summary
    pfam03371
    Location:10 → 172
    PRP38; PRP38 family
Nucleotide Protein
Heading Accession and Version

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