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LOC4346245 proteasome subunit alpha type-7-A-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346245, updated on 17-Jul-2024

Summary

Gene symbol
LOC4346245
Gene description
proteasome subunit alpha type-7-A-like
Locus tag
OSNPB_080548900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_00782; OsJ_000765; OJ1479_B11.3; OJ1112_E06.28
Expression
Ubiquitous expression in leaves after flowering (RPKM 78.9), flower buds (RPKM 61.9) and 6 other tissues See more
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Genomic context

See LOC4346245 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27680386..27684202)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27533295..27536896)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene thaumatin-like protein 1 Neighboring gene F-box protein At5g49610 Neighboring gene myb-related protein Zm38 Neighboring gene probable L-ascorbate peroxidase 4, peroxisomal

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

General protein information

Preferred Names
proteasome subunit alpha type-7-A
Names
20S proteasome alpha subunit D-1
20S proteasome subunit alpha-4-A
LOC_Os08g43540
proteasome alpha subunit
NP_001409610.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422681.1NP_001409610.1  proteasome subunit alpha type-7-A

    Status: VALIDATED

    Source sequence(s)
    AK098875, CA754778, CI449527, CI681232
    UniProtKB/Swiss-Prot
    A2YXU2, A2ZQE3, B9ETZ1, Q6YT00
    UniProtKB/TrEMBL
    B8B9D7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    27680386..27684202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)