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LOC4346173 chitin elicitor receptor kinase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346173, updated on 3-Dec-2024
Gene symbol
LOC4346173
Gene description
chitin elicitor receptor kinase 1-like
Locus tag
OSNPB_080538300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RLK9; CERK1; OsCERK1
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Try the new Transcripts and proteins table
See LOC4346173 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27055659..27060091)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26908888..26913497)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene glycine--tRNA ligase, mitochondrial 1 Neighboring gene UPF0481 protein At3g47200 Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene uncharacterized LOC4346175

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Release of a ubiquitin brake activates OsCERK1-triggered immunity in rice. Wang G, et al. Nature, 2024 May. PMID 38750355
  2. Overexpressed BSR1-Mediated Enhancement of Disease Resistance Depends on the MAMP-Recognition System. Kanda Y, et al. Int J Mol Sci, 2020 Jul 29. PMID 32751339, Free PMC Article
  3. The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling. Carotenuto G, et al. New Phytol, 2017 Jun. PMID 28369864
  4. OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity. Ao Y, et al. Plant J, 2014 Dec. PMID 25335639
  5. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Release of a ubiquitin brake activates OsCERK1-triggered immunity in rice.
    Title: Release of a ubiquitin brake activates OsCERK1-triggered immunity in rice.
  2. Overexpressed BSR1-Mediated Enhancement of Disease Resistance Depends on the MAMP-Recognition System.
    Title: Overexpressed BSR1-Mediated Enhancement of Disease Resistance Depends on the MAMP-Recognition System.
  3. CERK1 plays a central role in perceiving short-chain chitin oligomers signalsnd activating the downstream conserved symbiotic signal transduction pathway.
    Title: The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.
  4. The rice LysM receptor-like kinase OsCERK1, a key component of the chitin elicitor signaling pathway, also plays an important role in PGN-triggered immunity in rice.
    Title: OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane receptor protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
chitin elicitor receptor kinase 1
Names
Chitin elicitor receptor kinase 1
LOC_Os08g42580
LysM RLK1
LysM domain receptor-like kinase 1
LysM domain receptor-like kinase 9
LysM-containing receptor-like kinase 1
OsLysM-RLK9
P0665C04.34
P0666G10.101
receptor protein kinase PERK1-like protein
NP_001409594.1
NP_001409595.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422665.1 → NP_001409594.1  chitin elicitor receptor kinase 1 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AK111766, AK112001, CI127884, CI458910, CI641000
    UniProtKB/Swiss-Prot
    A0A0P0XII1, B7F461, Q0J431, Q6ZD33
    UniProtKB/TrEMBL
    B8B954

  2. NM_001422666.1 → NP_001409595.1  chitin elicitor receptor kinase 1 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AK112001, CB658833, CI127884, CI458910, CI641000
    UniProtKB/TrEMBL
    B8B954

RNA

  1. NR_186402.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK111766, AK112001, CB664640, CI127884, CI458910, CI641000

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    27055659..27060091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0P0XII1.1 GenPept UniProtKB/Swiss-Prot:A0A0P0XII1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials