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LOC4346169 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346169, updated on 12-Jul-2024
Gene symbol
LOC4346169
Gene description
OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1
Locus tag
OSNPB_080537800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
WTG1
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See LOC4346169 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27029720..27034217, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26883104..26887659, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable nucleolar protein 5-2 Neighboring gene ADP-ribosylation factor GTPase-activating protein AGD3 Neighboring gene O-fucosyltransferase 13 Neighboring gene ethylene-responsive transcription factor ERF113-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice. Huang K, et al. Plant J, 2017 Sep. PMID 28621888
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1
Names
Os08g0537800
P0665C04.29
Wide And Thick Grain 1
putative ubiquitin-specific protease otubain 1

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    27029720..27034217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794619.3 → XP_015650105.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1

    UniProtKB/TrEMBL
    B8B951, B9G207
    Conserved Domains (1) summary
    pfam10275
    Location:76 → 323
    Peptidase_C65; Peptidase C65 Otubain
Nucleotide Protein
Heading Accession and Version

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