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LOC4346107 ubiquitin carboxyl-terminal hydrolase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346107, updated on 17-Jul-2024
Gene symbol
LOC4346107
Gene description
ubiquitin carboxyl-terminal hydrolase 2
Locus tag
OSNPB_080527900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1770_H02.1; OJ1014_E06.24
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See LOC4346107 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26428230..26433355, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26281566..26286660, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 5.10-like Neighboring gene ubiquitin carboxyl-terminal hydrolase 2 Neighboring gene uncharacterized LOC4346108 Neighboring gene ubiquitin carboxyl-terminal hydrolase 2-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
ubiquitin carboxyl-terminal hydrolase 1; ubiquitin carboxyl-terminal hydrolase 2
Names
Os08g0527900
ubiquitin-specific protease-like

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    26428230..26433355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066303298.1 → XP_066159395.1  ubiquitin carboxyl-terminal hydrolase 2 isoform X2

  2. XM_015793596.3 → XP_015649082.3  ubiquitin carboxyl-terminal hydrolase 1 isoform X1

RNA

  1. XR_010734271.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials