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LOC4346063 oligouridylate-binding protein 1B [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346063, updated on 9-Aug-2018

Summary

Gene symbol
LOC4346063
Gene description
oligouridylate-binding protein 1B
Locus tag
OSNPB_080520300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1003_A09.12
Expression
Ubiquitous expression in flower buds (RPKM 45.7), leaves after flowering (RPKM 37.4) and 6 other tissues See more

Genomic context

See LOC4346063 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25859014..25864890, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene probable mitochondrial adenine nucleotide transporter BTL1 Neighboring gene RNA pseudouridine synthase 3, mitochondrial-like Neighboring gene pentatricopeptide repeat-containing protein At3g42630 Neighboring gene methyltransferase-like protein 13 Neighboring gene auxin response factor 21-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Expression

  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
oligouridylate-binding protein 1B
Names
Os08g0520300
P0689E12.36
putative oligouridylate binding protein

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    25859014..25864890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794271.2XP_015649757.1  oligouridylate-binding protein 1B

    UniProtKB/TrEMBL
    Q6YZW2
    Conserved Domains (4) summary
    cd12354
    Location:282356
    RRM3_TIA1_like; RNA recognition motif 2 in granule-associated RNA binding proteins (p40-TIA-1 and TIAR), and yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
    cd12619
    Location:159233
    RRM2_PUB1; RNA recognition motif 2 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins
    TIGR01661
    Location:83357
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:75145
    RRM_SF; RNA recognition motif (RRM) superfamily
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