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LOC4345970 pseudouridine-5'-phosphate glycosidase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345970, updated on 12-Jul-2024
Gene symbol
LOC4345970
Gene description
pseudouridine-5'-phosphate glycosidase
Locus tag
OSNPB_080504200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1134_H03.5-1; OJ1134_H03.5-2
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See LOC4345970 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (25075280..25080497, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24929573..24934805, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein WIP2 Neighboring gene uncharacterized LOC136351355 Neighboring gene uncharacterized LOC136351477 Neighboring gene thylakoid lumenal 19 kDa protein, chloroplastic Neighboring gene nuclear localization sequence-binding protein

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pseudouridylate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
pseudouridine-5'-phosphate glycosidase
Names
Erwinia chrysanthemi IndA protein homolog-like
Os08g0504200
Os08g0504400

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    25075280..25080497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795445.3 → XP_015650931.1  pseudouridine-5'-phosphate glycosidase isoform X2

    UniProtKB/TrEMBL
    A0A0P0XHZ7, B8BC97, B9G1P5, Q0J4M3, Q6ZK88
    Conserved Domains (1) summary
    pfam04227
    Location:20 → 310
    Indigoidine_A; Indigoidine synthase A like protein

  2. XM_015795444.3 → XP_015650930.1  pseudouridine-5'-phosphate glycosidase isoform X1

    UniProtKB/TrEMBL
    A0A0P0XHD2, A0A0P0XHZ7, Q0J4M3, Q6ZK87
    Conserved Domains (1) summary
    pfam04227
    Location:21 → 344
    Indigoidine_A; Indigoidine synthase A like protein
Nucleotide Protein
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