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LOC4345944 COP9 signalosome complex subunit 6-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345944, updated on 12-Jul-2024
Gene symbol
LOC4345944
Gene description
COP9 signalosome complex subunit 6-like
Locus tag
OSNPB_080500000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1118_A06.12
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See LOC4345944 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24826749..24830063, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24681224..24684533, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g80150, mitochondrial Neighboring gene F-box protein At-B Neighboring gene peroxisome biogenesis protein 5 Neighboring gene pre-mRNA-splicing factor CWC25 homolog

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa. Tan S, et al. Sci Rep, 2016 May 3. PMID 27137867, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deneddylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COP9 signalosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
COP9 signalosome complex subunit 6-like
Names
COP9 signalosome complex subunit 6a
Os08g0500000
putative COP9 complex subunit 6

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    24826749..24830063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015793055.3 → XP_015648541.1  COP9 signalosome complex subunit 6-like

    UniProtKB/Swiss-Prot
    Q0J4P9, Q2A0N7, Q6ZKM2
    UniProtKB/TrEMBL
    B8BC52
    Conserved Domains (1) summary
    cd08063
    Location:27 → 322
    MPN_CSN6; Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6
Nucleotide Protein
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